rs228659936 SNP Detail

Summary

• ID
  rs228659936
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87821586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCGAGG TGGAGCCCGA
  AGCCCATGAG GGTGACGGTG ATAAGAAGGG CAGTGCAGAG GGCAGCAGCG ACGAAGAAGG
  GAAACTGGTG ATCGATGAAC CAGCCAAGGA GAAGAACGAA AAGGGCACGC TGAAGAGGAG
  AGCAGGGGAT GTGTTGGAGG TAAATGCCAG CATGTGCTCT TTGGCACTTT GAGCCTCTGT
  S
  TTACAGCCCA ACTCTGAAGT ATAAATCCAG CTCCTGGTCT CTGGGAATCC ATTTGAGAGC
  GGAGAATAGA AGAGGATAGT GGGGCAGTGA ATGTCACCCA GAGACCCTGA GCAGGAGTGG
  AAGGAAGCAC AGGGAAATGA GCTATTAATG TTCTGTCTCT AGCCTCACTT TATGTCCTCT
  GATATCTGCT TAGGACTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786127	MGP_WTSI_3_87718201	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228659936					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786127	MGP_WTSI_3_87718201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87821586 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	Intron
Rr375307	regulatory region 375307	1817 bp downstream
Tssr29850	transcription start site region 29850	639 bp upstream
Tssr29851	transcription start site region 29851	777 bp upstream
Tssr29852	transcription start site region 29852	802 bp upstream
Tssr29853	transcription start site region 29853	882 bp upstream
Tssr29854	transcription start site region 29854	997 bp upstream
Tssr29855	transcription start site region 29855	1205 bp upstream
Tssr29856	transcription start site region 29856	1258 bp upstream
Tssr29857	transcription start site region 29857	1281 bp upstream
Tssr29858	transcription start site region 29858	1299 bp upstream
Tssr29859	transcription start site region 29859	1333 bp upstream
Tssr29860	transcription start site region 29860	1471 bp upstream
Tssr29861	transcription start site region 29861	1510 bp upstream