rs228645881 SNP Detail

Summary

• ID
  rs228645881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:118193317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCATATG CGTGCATGTA
  TGGATAATAT ACATTTGTGT CCTTGGGACA GCTTATTTTT TAAGACGCAG GCAGAAGGAA
  GAGTGGCTGT CTATATTGTT AGTGATAAAG CTCTGCCTGT CTTAACCCCC ATCCTATTGG
  CATCAGAAAG AAAATTGCTT TAAGGAGCAA GTAGATATAC CAGTTCCCTA TAAGGGCCTT
  R
  AGCGACATTA AGAGACAGAA GCAGAGCTGC ATACACATGT CTCTCAGCCA TGCATGAGAA
  TTCACCTTTA GGAAAATGAG ATGGATCTGA AAACAAGCCA CAGCATCCTT GGGGGGGGGG
  GCTTGGTACG AAGAACTGCC CACCGCAAAG TCTCCCCTGC TGCGTGCTTA GTTACTGACA
  CAGAAATCAA CAGGGTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384897328	MGP_WTSI_11_118163805	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228645881					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384897328	MGP_WTSI_11_118163805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118193317 () rs orientation: forward

Symbol	Name	Function Class
Timp2	tissue inhibitor of metalloproteinase 2	mRNA-UTR
Tssr112101	transcription start site region 112101	1062 bp upstream
Tssr112102	transcription start site region 112102	878 bp upstream
Tssr112103	transcription start site region 112103	332 bp upstream
Tssr112104	transcription start site region 112104	321 bp upstream
Tssr112105	transcription start site region 112105	87 bp upstream
Tssr112106	transcription start site region 112106	68 bp upstream
Tssr112107	transcription start site region 112107	124 bp downstream
Tssr112108	transcription start site region 112108	296 bp downstream
Tssr112109	transcription start site region 112109	434 bp downstream
Tssr112110	transcription start site region 112110	560 bp downstream
Tssr112111	transcription start site region 112111	594 bp downstream
Tssr112112	transcription start site region 112112	646 bp downstream
Tssr112113	transcription start site region 112113	730 bp downstream
Tssr112114	transcription start site region 112114	998 bp downstream
Tssr112115	transcription start site region 112115	1061 bp downstream
Tssr112116	transcription start site region 112116	1146 bp downstream
Tssr112117	transcription start site region 112117	1244 bp downstream
Tssr112118	transcription start site region 112118	1357 bp downstream