rs228307476 SNP Detail

Summary

• ID
  rs228307476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131985951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTGCAGG GGTAGTACAG CTCAGGGCCG
  AGGCTTGGCA TGAGCCATGG GGTCAACCTA CAGCAAAACA GTTTTCTCTG TAGTTTGCTT
  TTTAGTCCtt gcttagtttt gggctggtct caaactctct atgtagctgt gggtgacctc
  S
  tgctattgag cctccagctt ctaccaagct cgggaatgaa ggcaaaaacc tccacattca
  gttACTTGGG TAtttgagag aaaagtctca ctaagtagtc caggctgggc ttgaactttc
  aatcctcctg gctcagtcta cagagagctg                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331978	CHEV_4_131814555	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228307476					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131985951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm28874	predicted gene 28874			1896 bp upstream
Gmeb1	glucocorticoid modulatory element binding protein 1			Intron
				mRNA-UTR
Rr600911	regulatory region 600911			1746 bp proximal
Rr600912	regulatory region 600912			1899 bp proximal
Tssr39362	transcription start site region 39362			1864 bp upstream
Tssr39363	transcription start site region 39363			1881 bp upstream