rs228150185 SNP Detail

Summary

• ID
  rs228150185
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189496406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGGCA GGTCCTTCTC
  TTGATGGAGC TCAACCCCTA TTATGCCTTG TTCATCACAG CTTCCCCAGG GCTGAGCAGG
  CGCCTCTAGA CTCATGATGT CTCCTGGAAG GGTCTGAGCA CAGGGGCATA GGTGTGCTAC
  TCCCCACATC TAGAGAGGGG GCCAAGATGG AACCCTGGAC CTTCTCTCCT AAGAATCTTG
  M
  TCCTAGTTCC TGCCTCCAGA TGCAGGAGAG GGAGAGGGAG AGGGAGAGGA CATCTTACAT
  ACAGCTCAGG GACAGCCAGA AGACAATCGC CTCGAGGCCT GGCTGTGAGC TCTGGGTCTA
  GAGGGTCTGC TGTGGCAGTG GTTCTCAGGA CCTTGTGTTT GGACTTCCAG GGGCGGGTCT
  AGTACTTGCA TGCAAATATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320191534	CHEV_1_191588088	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228150185					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189496406 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	1831 bp downstream
Rr425841	regulatory region 425841	1919 bp distal
Rr425842	regulatory region 425842	70 bp proximal