rs228101250 SNP Detail

Summary

• ID
  rs228101250
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105722520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAATAAG GAGAATGGCT
  ACCAAGGAAG GCCACAGTTG ATTTGAAGTG GGTAAAGTAT TGTCAAAGAT TCCAAGCCCC
  ACATGTCAAG AGATGTGAAC TCATTTATGT TGAATGGTCT AGATGATGAT AATGCTTTGG
  GCTTGTTTCT TAGAGTGTAG TCTGGACTCT GGACATTCTA CAAAATTTAA TTTCGAGTAT
  W
  AGCAGAGCAT AATGACGACC ACCCCATAAG AATTTGGATA GAAGGACGGC AGCAAGTGTG
  GGTCGGGGGA GCCTTGATCA GTGACAAGGT GTGAACAAGG CAGAGGCTTT GGGCTGACAA
  GGAACAGTCG CCAGACTTCA AAGCTTGTGA TGAGGCTGAC AGCATTGAGG AGCTGTGTAG
  AGACTTGGCT GTCAGCCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863283	CHEV_3_105618122	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228101250					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105722520 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	363 bp upstream
Rr582787	regulatory region 582787	within coordinates
Rr582788	regulatory region 582788	386 bp proximal
Rr582789	regulatory region 582789	929 bp proximal
Tssr31084	transcription start site region 31084	326 bp upstream