rs227804661 SNP Detail

Summary

• ID
  rs227804661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90418327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA CACATAGCCA TGCCCAGAGG
  R
  TACAGACATT GATAGCTGGT GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837930	CHEV_3_90314942	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227804661					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90418327 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	1522 bp upstream
Cpgi13465	CpG island 13465	1251 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	360 bp upstream
Rr397813	regulatory region 397813	1343 bp downstream
Rr580381	regulatory region 580381	1914 bp distal
Rr580383	regulatory region 580383	1032 bp distal
S100a1	S100 calcium binding protein A1	14 bp downstream
Tssr30207	transcription start site region 30207	1915 bp downstream
Tssr30208	transcription start site region 30208	1334 bp downstream
Tssr34238	transcription start site region 34238	1514 bp upstream
Tssr34239	transcription start site region 34239	1492 bp upstream
Tssr34240	transcription start site region 34240	113 bp downstream
Tssr34241	transcription start site region 34241	1000 bp downstream