rs227687859 SNP Detail

Summary

• ID
  rs227687859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:78289978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTGGAGG AAGCTTCAGT GTCAGCTCAC
  CATGGAGGCC AGGATGGGCA GAAATAGTGT AGTGGTGGCC ACGTTGCTGG TGCACTCAGT
  GAAGATGGCC ACCAATAGAG AGAGGATGAG CACGGTGGCT GATGGCGGTA CGTGCTGCAG
  Y
  GGGGTCAGTT TGTCTCCCAG CCACTTAGAC AAACCTGATT CCTGAAGCCA GAAGGAGGTG
  ATATATATGA GACAGAACTG TCTGGGGTCC TCAGGTTCTC AGCTGGAACT CTGGGAAACC
  CTATCCCTGC CCACACCTCT GTGGCCTTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756555	CHEV_11_78212654	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227687859					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78289978 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr451962	regulatory region 451962			1516 bp distal
Rr451963	regulatory region 451963			361 bp proximal
Rr451964	regulatory region 451964			440 bp proximal
Rr451965	regulatory region 451965			713 bp proximal
Slc13a2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Slc13a2os	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand			within coordinates
Tssr109394	transcription start site region 109394			1666 bp downstream