rs227409545 SNP Detail

Summary

• ID
  rs227409545
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCCTTC CTTTCTCTCT
  CCTTGTCCCT CCAAATTCTC ACCTTTTTCG TTCTATTTTT ATTCTTTCAC AGTACAGAGA
  AATGATTTTT AAACGATTCA TGTCCACTTC TGAATTGCAC AATTGCTTGC TAACTTTGTG
  TAACACAGTG GGGCTGGCAA CTTCACAAAA CAAACACTAA TGGACAAAAA AGGACTGAAA
  C
  ATAAGAGAAT GATTTCAAAA CCACACCCTT TTCACCCTAC ATTTTGAAAC ACCCACAAGA
  AATGGCACCA TTTATCAATC TCTACCTGAG AAGTCCTGAG ACCCTCCTCC CATGAGCAAA
  CCCCTCATTC CTGCAGTGCT GGTTGAGTCA TCCCTCCAAC CCCACCCCAG TTAGGAACTC
  TTTTAGTTTC ACTTTCACTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LP/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ
ss360024916	MGP_WTSI_3_142283381	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LP/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ
rs227409545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024916	MGP_WTSI_3_142283381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326178 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	246 bp upstream
Gbp2b	guanylate binding protein 2b	1238 bp downstream
Gm54185	predicted gene, 54185	1135 bp upstream
Rr398088	regulatory region 398088	234 bp downstream
Rr586457	regulatory region 586457	1441 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	196 bp proximal
Tssr32223	transcription start site region 32223	1958 bp downstream
Tssr32224	transcription start site region 32224	1904 bp downstream
Tssr32225	transcription start site region 32225	1566 bp downstream
Tssr32226	transcription start site region 32226	1526 bp downstream
Tssr32227	transcription start site region 32227	179 bp upstream
Tssr32228	transcription start site region 32228	230 bp upstream
Tssr32229	transcription start site region 32229	269 bp upstream
Tssr32230	transcription start site region 32230	305 bp upstream
Tssr32231	transcription start site region 32231	322 bp upstream
Tssr32232	transcription start site region 32232	856 bp upstream
Tssr35947	transcription start site region 35947	1236 bp upstream