rs227313797 SNP Detail

Summary

• ID
  rs227313797
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132388653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGCCT CCTAACTGAT
  CTCCTTTCTC ACTTCTGCCC CCAGTCTAAG AGGGCTATGG AGTAACCCTC TTAAAACGAA
  GCTGGGTAAC ATTACTTGGC CTTGGAAAAC CTTCTATGGC TTTCACTCCC CCTGATTAGC
  CCACACTCTC TGTCTGCATC ATGAATCCCC TCTCTCAGTT CTGAGCCCAC AGGCATTGGT
  M
  AGACCCCTTC ATACTTTGGT AAGTTTCTGT TGCATGGCCT TCGCAATGGC TTGGCCTTAT
  GACTGACTGT ACTTCTTGAA GGTTTTCTCT ATTGTTAATT CTATTTGTGT CACCTCCTTC
  CTAGAAAGCC ATCTTTTCCT TGAGAACCTT CTCTGGCAAC CATGTCAAAT AATCTACCTT
  TTTTTTTTTA TGGCTTAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359770636	MGP_WTSI_3_132345856	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227313797					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359770636	MGP_WTSI_3_132345856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132388653 () rs orientation: forward

Symbol	Name	Function Class
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	Intron
Cpgi13843	CpG island 13843	832 bp proximal
Rr367561	regulatory region 367561	834 bp upstream
Rr585442	regulatory region 585442	278 bp proximal
Rr585443	regulatory region 585443	785 bp proximal
Rr585444	regulatory region 585444	982 bp proximal
Rr585445	regulatory region 585445	1263 bp proximal
Tbck	TBC1 domain containing kinase	1252 bp upstream
Tssr31756	transcription start site region 31756	1214 bp upstream
Tssr31757	transcription start site region 31757	1267 bp upstream
Tssr35732	transcription start site region 35732	932 bp downstream