rs227300889 SNP Detail

Summary

• ID
  rs227300889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15333687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGCAGG TGCTGACAGA
  GGCCAAAGGT ATTAAATCCC CTAGAACTGA GCTTACAAGT AGTTGAGGTA GATGCCAGGA
  GTTGAACTTG AGTCCAACAC TCAAGAACTC TTAACCTTAA CTGCTGAACT AGCTGTCTAG
  ATGTTCCTGC CACTCACAAC CTCCTTGTTC AGGACTTTTT GACACAAGAA GACAACCAAT
  W
  TTTGGGTGAC CGGAAATACA GTGAGCTGCC TGTCCACTAT TGCCATTCCT TCTTAGAAGA
  TATTCAGAGC AGAGAATAAA CTTTTAAAGT GCCAGCTTAA TTTTACTCGT ATTTGGCAGT
  CCAGGTTTGG TGGGGGAGGG GGAGGGGAAA GGAGAAGCAA CTCCAAACTG AAAGAATCTC
  TGACACATGA CTAGCTAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325533076	CHEV_18_15359139	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227300889					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15333687 () rs orientation: forward

Symbol	Name	Function Class
Gm50035	predicted gene, 50035	482 bp downstream
Gm57822	predicted gene, 57822	within coordinates
Rr534370	regulatory region 534370	847 bp proximal