rs227070418 SNP Detail

Summary

• ID
  rs227070418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATAGATA GTAACCCCTT
  CCCGCGTCCA AACCATGGCT CTTTGCGCAG GTTTTCCTGC TTGTCCGGGT TCGGAGTTCA
  AATTTGAACT TCCTTGGAAC CGGTACAACA ACTGTGCAGT GACTTGACAA CTCTAAGCCA
  CCTATTTCCC GAAAGGTACA TGTCGTTCAT GTACAATGAA ATGATACTTG AAAAGTACTT
  R
  GGCAAGTTTC TGAGGCCGGG GAATAGTAAC TGACAAGCTT TAAGGCAATG TGGTCAGGCC
  TTGGGGTTAG ATGCTTTTGG TTTATAAATT CCTCAGAGCC ACCTTACTCT TTCATTCTCA
  TCTTTGAAAG TTAAACAGGA ACGTCGGCAC GTGCTGGTGG TACACGCTTT TAATTCCACA
  ATTCCTGTCT AGCCTGGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331995	CHEV_4_131818038	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227070418					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	281 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	521 bp upstream
Rr600911	regulatory region 600911	1585 bp distal
Rr600912	regulatory region 600912	613 bp distal
Rr600913	regulatory region 600913	31 bp distal
Rr600914	regulatory region 600914	745 bp proximal
Rr600915	regulatory region 600915	940 bp proximal
Tssr39362	transcription start site region 39362	1606 bp downstream
Tssr39363	transcription start site region 39363	1585 bp downstream
Tssr43650	transcription start site region 43650	551 bp upstream
Tssr43651	transcription start site region 43651	501 bp upstream