rs227018497 SNP Detail

Summary

• ID
  rs227018497
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTTCG CTTCAGCCAA
  AGAAAATCCA GCTATATTTT TCTGGGTTCC AGCATTTCAG TGACAGCTGC ATTCATGAAT
  GACCAAATTA ACTATTGTGG AGCTTTCTAA AAATATACAA AGCACTCACT CCACCGTATG
  CTATAAGCAG GTCATGAAAT ATCAGGGGGG GAAAAAAAAA ACCTCCAACA AAACAACCAA
  M
  CAAACAAACA AAAAAGCCAG ACCCCGAAGG AAATGCATCA AGGGTATAAG AGTTTTCCAT
  TTAAAACAAC AAAATGAAAC GGCTAACGTT TGATCCAGCA CATCCATCCT GTACTGTACT
  TCTGTCGATC AGAAAGCTGG TGTGCTTACT GACTTTTTCT TTAAGCACTT AAGATCACGG
  AGTGGCATGC CAAGTCTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354406958	MGP_WTSI_2_70892766	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227018497					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354406958	MGP_WTSI_2_70892766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			638 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			619 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			804 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			853 bp proximal
Rr558664	regulatory region 558664			1028 bp proximal
Rr558665	regulatory region 558665			1555 bp proximal
Tssr18237	transcription start site region 18237			1022 bp upstream
Tssr24467	transcription start site region 24467			795 bp downstream
Tssr24468	transcription start site region 24468			807 bp downstream
Tssr24469	transcription start site region 24469			825 bp downstream