rs226986699 SNP Detail

Summary

• ID
  rs226986699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5286047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCTACC TTTCGGTGAG
  ACACCCTCTT TGTAGGTACC AAAGGTTCAG ATCACAAACA TGGACACCCC CCCCCCAAAC
  ACACACACAC ACACACACAC ACACACACAC ACACACTCAC AGTCAACACT CACAGAACAC
  ACATTCGCCC CACTCCCCCC ACCTCTAGCC CCAACCTTGC CTTCACTTTC CCCCTCCCCC
  M
  AAAAGCACAC ACAGAACAAC ATCCCCCACC AGCACCAAAC AAAAACCCAA AGACAAGTTC
  AGTGGACGAA GATGGTGTAT TGACACTGAC TCAGACAGAG GCAGGTTCAC CAAGAAATCT
  AGCGTTGGTG ATTTCTGACA GTTGCATTTC CTCTCCTTGA GCACCCCCCC CCCAACCCTT
  TATTAACTCT GTTCCATGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss356829151	MGP_WTSI_3_5220987	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs226986699					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356829151	MGP_WTSI_3_5220987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5286047 () rs orientation: forward

Symbol	Name	Function Class
2700069I18Rik	RIKEN cDNA 2700069I18 gene	164 bp upstream
Rr573173	regulatory region 573173	70 bp distal
Rr573174	regulatory region 573174	within coordinates
Rr573175	regulatory region 573175	458 bp proximal
Tssr28271	transcription start site region 28271	1951 bp downstream
Tssr28272	transcription start site region 28272	1934 bp downstream
Tssr28273	transcription start site region 28273	1913 bp downstream
Tssr28274	transcription start site region 28274	61 bp upstream
Tssr28275	transcription start site region 28275	202 bp upstream
Tssr28276	transcription start site region 28276	238 bp upstream
Tssr32523	transcription start site region 32523	192 bp upstream
Zfhx4	zinc finger homeodomain 4	Intron