rs226919973 SNP Detail

Summary

• ID
  rs226919973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAAGAT ATAGCCTCAG
  CAGTCTAGAG CATGAGACCT GAAGGGCTGG TCCTAGAGAG GCTCCTTCAA GCTTTTTGAG
  CAAACTGCAC TGTTAGCACT AAAGGTAGGT GTGAGTGTGC AAGCGTGTAT GTGAGCGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCTGCACC CTACCCCACA ACATATTGCT
  Y
  TGATTATAAA GAGCTACTGT ATTTTTTGCT TTGGGAACCA AACTAACTAC CTACTATCTT
  AGGATATGAA CTTTTATTTC CATGGGATAT TTACTCCAAA TGATCATTTG TTTAACCCAC
  TGAACTACAC AGATCACAAG AAGGTAGTAT TCATGGTTAA CATCTTGCTG GGAACAATAC
  TAAGAAAATA TGTTTTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765063	CHEV_3_52557905	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226919973					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661404 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	465 bp proximal
Tssr33262	transcription start site region 33262	1062 bp downstream