rs226889620 SNP Detail

Summary

• ID
  rs226889620
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107544640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTCCTT TGAGTCTTTG
  ATTGCAACTC TCTGGTGTCC GTGTTCCTGT CGTAGTGTTC CCTCCCCCTC TCGGTTCCCC
  GTGCGCCGCA CCCCCTCCCC CCACCTGGGG CTAAGAAGTT GTTACCATTC TGGGCTCATT
  AGACTCTTGA AAGTTGCGAG GGGCGGGGGT GGGGGGGGTG GGGGGGGGTG GGGGTGGGGG
  G
  AGGTTCATAA AACTTTGCTT GTTTAAAAAA GTTTTCCTCA TTTCTGAAAG TGGGCAAGAG
  CGTATTCACT GGGTTGTCAT TTCAGGAATT TTACAGGAAA CTGGCACCAT TCAAAGAGTC
  TAAGTTTTAG ATAGGAAGTG ACTTTAATCC CAACATACGG ACCTCTGAAT TCAAGGCAGG
  CCTGGTCTAC AGAGTTCCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250040	CHEV_4_107360048	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226889620					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107544640 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	685 bp upstream
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	558 bp proximal
Tssr38260	transcription start site region 38260	1046 bp upstream