rs226605016 SNP Detail

Summary

• ID
  rs226605016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACTACA GAGATTTGAG
  TGTTTCCACA TGACTGAAGG TAATCCAGAA GGATCTAGGA AGCCCAGTAT CCCCGATCGA
  GAGAGGGTTC CCCCCCAAAT CAAAGCACAC TGCTGCTCGC CAACTTTGGG CCTCTAGGAC
  TCCCCCCCCC CCCATATGAC CGCCCACCGG GCGCTCGTTT CACAACTTGA AGGAGCCGGC
  Y
  AAAGCTGACC CAGGAGGCCA GATCTCTCTA GAACTCTTAC CCTGTCAACT CCCCCCCTAC
  CTCAACCTTA GCACCTGCTT GGCCACCAAA CCGCGCCATG GGCAGCGAAG GGCACTAGAC
  AGGTGTGATG CCGCTTCCGC CCTACGCGAG TGACAGCAGT GTGCCAGCTT TTCGTCCCAA
  GGGGATCGCC GGTATCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858531	MGP_WTSI_7_29163860	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226605016					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858531	MGP_WTSI_7_29163860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44710	predicted gene 44710			139 bp upstream
Gm57214	predicted gene, 57214			1571 bp downstream
Rr368284	regulatory region 368284			1693 bp upstream
Rr400210	regulatory region 400210			369 bp upstream
Rr644239	regulatory region 644239			1677 bp distal
Rr644240	regulatory region 644240			887 bp distal
Rr644241	regulatory region 644241			within coordinates
Rr644242	regulatory region 644242			150 bp proximal
Rr644243	regulatory region 644243			404 bp proximal
Rr644244	regulatory region 644244			1289 bp proximal
Rr644245	regulatory region 644245			1402 bp proximal
Rr644246	regulatory region 644246			1918 bp proximal
Tssr2163	transcription start site region 2163			515 bp downstream
Tssr2164	transcription start site region 2164			648 bp downstream
Tssr2165	transcription start site region 2165			691 bp downstream
Tssr65463	transcription start site region 65463			1346 bp downstream
Tssr65464	transcription start site region 65464			788 bp downstream
Tssr65465	transcription start site region 65465			511 bp upstream
Tssr71490	transcription start site region 71490			1847 bp upstream
Tssr71491	transcription start site region 71491			1750 bp upstream
Tssr71492	transcription start site region 71492			1672 bp upstream
Tssr71493	transcription start site region 71493			1622 bp upstream
Tssr71494	transcription start site region 71494			1587 bp upstream
Tssr71495	transcription start site region 71495			1557 bp upstream
Tssr71496	transcription start site region 71496			1210 bp upstream
Tssr71497	transcription start site region 71497			962 bp upstream
Tssr71498	transcription start site region 71498			901 bp upstream
Tssr71499	transcription start site region 71499			807 bp upstream
Tssr71500	transcription start site region 71500			783 bp upstream
Tssr71501	transcription start site region 71501			756 bp upstream
Tssr71502	transcription start site region 71502			731 bp upstream
Tssr71503	transcription start site region 71503			690 bp upstream
Tssr71504	transcription start site region 71504			659 bp upstream
Tssr71505	transcription start site region 71505			642 bp upstream
Tssr71506	transcription start site region 71506			628 bp upstream
Tssr71507	transcription start site region 71507			581 bp upstream
Tssr71508	transcription start site region 71508			547 bp upstream
Tssr71509	transcription start site region 71509			487 bp upstream
Tssr71510	transcription start site region 71510			443 bp upstream
Tssr71511	transcription start site region 71511			407 bp upstream
Tssr71512	transcription start site region 71512			327 bp upstream
Tssr71513	transcription start site region 71513			255 bp downstream
Tssr71514	transcription start site region 71514			384 bp downstream
Tssr71515	transcription start site region 71515			406 bp downstream
Tssr71516	transcription start site region 71516			1440 bp downstream
Zfp36	zinc finger protein 36			Intron
				mRNA-UTR