rs226515744 SNP Detail

Summary

• ID
  rs226515744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taggtgaag tcagaatgag ccatagaatg
  agaaggagcc agaagattag aacagattgc ctaagttagt atgagaccaa gcaaaggaat
  tcaggagaga cagagataga gacaggcaga gagagaaaca cacacacaga gaaaacagat
  Y
  gaaacagtca aagctcagga aaaaaaaaaa ccaacctaga aagtgtgagc ttattcagca
  gcgagtctca gaggctgaaa atattctaga cctagataag attgtacaga ggctagaagc
  ttccaggact agcgtaggtt agcagacaga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250057	CHEV_4_107362160	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226515744					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546752 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	45 bp upstream
Gm12899	predicted gene 12899	877 bp downstream
Rr376978	regulatory region 376978	744 bp downstream
Rr597042	regulatory region 597042	866 bp distal
Tssr38260	transcription start site region 38260	1062 bp downstream