rs226479575 SNP Detail

Summary

• ID
  rs226479575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145746179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGAAGTA TGGACCGGAA GGTTTAGGTA
  ACAGAAGGGA AGAAACTCTG GGATGATGGA CATTTCAAAG AGGGGATGAA CCTTGATGAA
  GGAAATTTGG CAAGGAGGAA ACTCTGGAGA AGGCTGCAGG AAAATGGAGT GTGAAGCAGG
  R
  TAGGCCTTTG CTTCAGGTGA AGCCAGGTTT AATTATCGTG TTTAATTGGT TCAGATCCGA
  TCTTGTGAGA TTTCGGTTAG GTCCCGCTTG TGTTGAATCC TCTGTGCATT TTAGTACTTG
  TGGCAGGCGC TCATGTAATA ATAGGCCCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320538612	CHEV_2_145729995	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226479575					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145746179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm74898	predicted gene, 74898			1054 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr397366	regulatory region 397366			926 bp downstream
Rr566598	regulatory region 566598			1065 bp distal
Rr566599	regulatory region 566599			955 bp distal
Rr566600	regulatory region 566600			179 bp distal
Rr566601	regulatory region 566601			977 bp proximal
Rr566602	regulatory region 566602			1015 bp proximal
Rr566603	regulatory region 566603			1191 bp proximal
Rr566604	regulatory region 566604			1230 bp proximal
Rr566605	regulatory region 566605			1777 bp proximal
Tssr20600	transcription start site region 20600			1032 bp downstream
Tssr20601	transcription start site region 20601			959 bp downstream
Tssr20602	transcription start site region 20602			356 bp downstream