rs226236070 SNP Detail

Summary

• ID
  rs226236070
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162692811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACC CCGGGTCCTC
  TCCATGCAGT TTTATGAAGC AGGGGCTCAA CAGCTTCTAT GATAAAAAGT GGGAAAGTGT
  TCTATGAGGA ACAACACATG AGAAGGTCCT GTCTTAGCTG ATCCTAAGAT CTGAGAATCT
  ACAGCGCTCA GCCACCCCAT AAATCCACAC TGAGTGTGAT TATGAGTGAA ATAAAAACGA
  M
  TTTTCTTTCA ATTTCTTTAC AATCTGTACA ACCGCCTACA ACAGTTAGAA CATAAGCACA
  GATTTGTTTG GGCTTGACTA CTTAGCAGGA ACTTTGGCCT GGGGGAACTG TGAAGGAATT
  GCTGACATGC AAATCATCAC TTTAAACCTG GGAAGTTTGG GAACCTCTAA TCCAAGTCTT
  ACCTTTTGAG TGTGTTTTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352178880	MGP_WTSI_1_164795373	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226236070					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352178880	MGP_WTSI_1_164795373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162692811 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	687 bp distal
Rr422027	regulatory region 422027	within coordinates
Rr422028	regulatory region 422028	1214 bp proximal
Rr422029	regulatory region 422029	1358 bp proximal
Tssr14673	transcription start site region 14673	1117 bp downstream
Tssr14674	transcription start site region 14674	1183 bp downstream
Tssr14675	transcription start site region 14675	1198 bp downstream
Tssr14676	transcription start site region 14676	1221 bp downstream
Tssr14677	transcription start site region 14677	1241 bp downstream
Tssr14678	transcription start site region 14678	1260 bp downstream