rs226070775 SNP Detail

Summary

• ID
  rs226070775
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118287076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCTAGT CAGACAGGTG
  GAGCCGCCAG GGCAGGAGTC TCAAAGAGCC AGGCTCCTGG AGTGGAAGAG AGAGAGAGGC
  AGAACTTGCC CCTGAGAAGA AGGGAGGAGA GAGGCTGGAG GTGAAGCACT GGAAGAAGGC
  AGGAGGCTGG AGGTGAGAGC CTGGGAGGCA AAGGGGAAGC CCGGGGGCAC TGGTGTTCAC
  S
  ACAGAAGTGG AACCCTAGGT TTGTTCAGGT ACTAGAAAGG ACAGAAGCAG GTGGGAGTCC
  CTGCAGGGGA CAGAGGCGAG AGGAGAGTCT TGGAAAAGGG CCAGAGGGAC TTTACCTGGG
  AGAAGGGGGT ATGAGAGGAG TGGCTGAAGG GGAGATTCTC TGGAGAGAAG AGTGTCTCTC
  AAAGCTGAGA GATGAGACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362992114	MGP_WTSI_4_118102484	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226070775					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362992114	MGP_WTSI_4_118102484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118287076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14684	CpG island 14684			1831 bp distal
Elovl1	ELOVL fatty acid elongase 1			Intron
				Noncoding-Transcript-Variant
Rr598393	regulatory region 598393			1744 bp distal
Rr598394	regulatory region 598394			1610 bp distal
Rr598395	regulatory region 598395			168 bp distal
Rr598396	regulatory region 598396			within coordinates
Tssr38658	transcription start site region 38658			1685 bp downstream
Tssr38659	transcription start site region 38659			1063 bp downstream
Tssr38660	transcription start site region 38660			189 bp downstream
Tssr38661	transcription start site region 38661			154 bp downstream
Tssr38662	transcription start site region 38662			115 bp downstream
Tssr38663	transcription start site region 38663			1327 bp upstream