rs225910456 SNP Detail

Summary

• ID
  rs225910456
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCCTGGC CCGCCCCTCC
  TGAGACAGGA CACGCCCACT CGACCACAGG GCCTGCCCCC GTCCCCGCCC CCCGCGCGGC
  GCTCCATACT TGGCGATCGC TGCGGCCCCG CGCTCTCATT GGTCGGGAGC TGGCGGCTGG
  GGGGCGGGTC GGGCTGGCCG GGGCGGGGAA GGAAGGTGGT GGCTGCCCGG CGCGGGGGGG
  K
  GGGGGGGGGA GGGGGGCGCT GACCCGGATG TTCACTCTTG GGCACCCGGG GAAGTGGAAG
  CGCAGGGCCC TGCTGCGGGG GGGAGAGCCA CAGACGCCGG GACAGGGACC GTCGCCGCCG
  CCGCCACCAT GGTAAAGGGA CCCCTTCACG GCTCCATCCC GGGACCCCTC TCACCGCCGG
  AGCTCGCGTC CACTCCTTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	MA/MyJ	PL/J	QSi3/Ianm	SJL/J
ss363460520	MGP_WTSI_4_138748812	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	MA/MyJ	PL/J	QSi3/Ianm	SJL/J
rs225910456					SNP	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363460520	MGP_WTSI_4_138748812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920208 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	2 bp upstream
Cpgi15162	CpG island 15162	within coordinates
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	191 bp distal
Rr603134	regulatory region 603134	within coordinates
Rr603135	regulatory region 603135	38 bp proximal
Rr603136	regulatory region 603136	200 bp proximal
Tssr39900	transcription start site region 39900	20 bp upstream
Tssr39901	transcription start site region 39901	45 bp upstream
Tssr39902	transcription start site region 39902	69 bp upstream
Tssr39903	transcription start site region 39903	337 bp upstream
Tssr39904	transcription start site region 39904	382 bp upstream
Tssr39905	transcription start site region 39905	412 bp upstream
Tssr39906	transcription start site region 39906	1189 bp upstream
Tssr44214	transcription start site region 44214	429 bp upstream
Tssr44215	transcription start site region 44215	260 bp upstream
Tssr44216	transcription start site region 44216	239 bp upstream
Tssr44217	transcription start site region 44217	179 bp upstream
Tssr44218	transcription start site region 44218	1099 bp downstream