rs225689106 SNP Detail

Summary

• ID
  rs225689106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTCTGA CCTATTGTCT
  GATTTGTGTT AAGTCCCTGG AAGATTTTAA GTACTAGTCC GTGGGTAAAT CAGCATGAGG
  ATTAATTAGA CATCTTCAGA ACTTCAAAGC ACAGTTTGGG ACACTTCTCA CAGCCACAGT
  GCCAGTGGCT TGTCAACTCC ATGGTCATTC CCAGCCTTAG CTCAGAGACT CACAGATGTC
  W
  GTCTCAGTTT TGACAGTGGC TTCCCTCAGC CTCTGAGAGA TGTTATTTGC ACTCAATGGT
  TTAGGGTCAG GACTCTGACT CACTTGTTTC TAAGGAAACA TACTACAAAT GACTGGAAAC
  TCCACCCCTT TAAGCTTAGA AACAAAAACA AAAAACAAAA AACAAAAAAA AAAGGAAAGA
  AAAGAAAGAA ATCCCTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss360024910	MGP_WTSI_3_142282745	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs225689106					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024910	MGP_WTSI_3_142282745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325542 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	882 bp upstream
Gbp2b	guanylate binding protein 2b	602 bp downstream
Gm54185	predicted gene, 54185	499 bp upstream
Rr398088	regulatory region 398088	101 bp upstream
Rr586457	regulatory region 586457	805 bp distal
Rr586458	regulatory region 586458	331 bp proximal
Rr586459	regulatory region 586459	832 bp proximal
Tssr32216	transcription start site region 32216	1596 bp downstream
Tssr32217	transcription start site region 32217	1558 bp downstream
Tssr32218	transcription start site region 32218	1504 bp downstream
Tssr32219	transcription start site region 32219	1467 bp downstream
Tssr32220	transcription start site region 32220	1453 bp downstream
Tssr32221	transcription start site region 32221	1435 bp downstream
Tssr32222	transcription start site region 32222	1379 bp downstream
Tssr32223	transcription start site region 32223	1322 bp downstream
Tssr32224	transcription start site region 32224	1268 bp downstream
Tssr32225	transcription start site region 32225	930 bp downstream
Tssr32226	transcription start site region 32226	890 bp downstream
Tssr32227	transcription start site region 32227	815 bp upstream
Tssr32228	transcription start site region 32228	866 bp upstream
Tssr32229	transcription start site region 32229	905 bp upstream
Tssr32230	transcription start site region 32230	941 bp upstream
Tssr32231	transcription start site region 32231	958 bp upstream
Tssr32232	transcription start site region 32232	1492 bp upstream
Tssr35947	transcription start site region 35947	600 bp upstream