rs225639158 SNP Detail

Summary

• ID
  rs225639158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113412283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCAGCTCT GGTTGGGGTG GTATTGGGCT
  CACATGCCTG TTTTCCTCCC TGTAGTGCTG TTCTCTGGTT CTTGCCTGCT GGGGCTGTAA
  GGCCCTGCAC AGCCAGTCTC TTTACCTGTG GTACAGCTTG TGTCATACTC AGGACTCCAC
  R
  CAGGCCACCT AGAAGTCCCA GGTTCCCCGT TGCCGCCTCA GGAAAACCTT CCCCAATAAC
  TGGCAGAAGG ACCCTCCATC CTGCCCACCC CCTGTCCATG TCTCTGAAGC TCCTGTGTCC
  TTGATGCCTC TGTTTTCAGC CCTTAGCACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910863	CHEV_6_113385316	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225639158					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113412283 () rs orientation: forward

Symbol	Name	Function Class
Cidec	cell death-inducing DFFA-like effector c	Intron
Gm52871	predicted gene, 52871	within coordinates
Rr636516	regulatory region 636516	68 bp distal
Tssr58211	transcription start site region 58211	416 bp downstream
Tssr62447	transcription start site region 62447	808 bp upstream
Tssr62448	transcription start site region 62448	776 bp upstream
Tssr62449	transcription start site region 62449	552 bp upstream
Tssr62450	transcription start site region 62450	534 bp upstream
Tssr62451	transcription start site region 62451	515 bp upstream
Tssr62452	transcription start site region 62452	426 bp downstream