rs225633866 SNP Detail

Summary

• ID
  rs225633866
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34706348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTGTAC AAAAGGAAAA
  CATGAGAGCA AGTACTGGCA AGACCGTTTT CGTGGTCTTG TTTAAGGCAA ACGTTCTAGA
  TTGTACTAAA TTTTTAACTT ACTGTTAAAG GCAAAAAAAA AATGTCCATG CAGGTTGATA
  TCGTTGGTAA TTTATAATAG CTTTTGTTCA ATCCTACCCT TTCATTTTGT TCACATAAAA
  M
  ATATGGAATT ACTGTGTTTG AAATATTTTC TTATGGTTTG TAATATTTCT GTAAATTGTG
  ATATTTTAAG GTTTTTCCCC CCTTTTATTT TCCGTAGTTG TATTTTAAAA GATTCGGCTC
  TGTTATTGGA ATCAGGCTGC CGAGAATCCA TGTATATATT TGAACTAATA CCATCCTTAT
  AACAGCTACA TTTTCAACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357517511	MGP_WTSI_3_34551121	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225633866					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357517511	MGP_WTSI_3_34551121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34706348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	670 bp distal
Gm54566	predicted gene, 54566	979 bp upstream
Gm64654	predicted gene, 64654	within coordinates
Gm64674	predicted gene, 64674	1868 bp downstream
Rr439	regulatory region 439	1826 bp proximal
Rr366704	regulatory region 366704	1033 bp upstream
Rr370604	regulatory region 370604	1967 bp downstream
Rr575168	regulatory region 575168	1784 bp distal
Rr575169	regulatory region 575169	252 bp proximal
Rr575170	regulatory region 575170	720 bp proximal
Sox2	SRY (sex determining region Y)-box 2	mRNA-UTR
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28825	transcription start site region 28825	1966 bp downstream
Tssr28826	transcription start site region 28826	1419 bp downstream
Tssr28827	transcription start site region 28827	1117 bp downstream
Tssr28828	transcription start site region 28828	1387 bp upstream
Tssr32980	transcription start site region 32980	1479 bp upstream
Tssr32981	transcription start site region 32981	1152 bp upstream
Tssr32982	transcription start site region 32982	1790 bp downstream