rs225423490 SNP Detail

Summary

• ID
  rs225423490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80594358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAGGGA TGGTAAAATT
  TAGTGAAGAT CATCATGAAA CTACATGTTA CCATGTAGAA TGCAAGTGGC TACTGTTAAA
  TCTTACATTT CTGATCCTTA AAAATAGTCA GTAAGGATGC TCTACCAAGC ACTTGGTCAG
  ACATCAAATA TTACACAGAT TTTTTATGAG AGAAAAATAA CATATAAATC TTAAAGATAA
  M
  TACTGGGTGT CAGTTGCTTT TAACTCTAAA GTAATTTTAT TTGGAGGACA TTAGTGGAAA
  TAAACATAAA AGATATTTTA AGGAAGGGAA GATAGATGGC TTAAATGAAT CAAATAGTGT
  AGTATGATTT CTTTAGTGGA AAGTTACAGA GATGGAACAG TATCCACATT ACACAAATTA
  AAGTGCTCCT TCTACTTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358613790	MGP_WTSI_3_80490973	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225423490					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358613790	MGP_WTSI_3_80490973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80594358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29614	transcription start site region 29614			939 bp upstream
Tssr33755	transcription start site region 33755			1065 bp downstream
Tssr33756	transcription start site region 33756			1084 bp downstream
Tssr33757	transcription start site region 33757			1217 bp downstream
Tssr33758	transcription start site region 33758			1268 bp downstream
Tssr33759	transcription start site region 33759			1286 bp downstream
Tssr33760	transcription start site region 33760			1394 bp downstream
Tssr33761	transcription start site region 33761			1423 bp downstream