rs225153235 SNP Detail

Summary

• ID
  rs225153235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53370612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGGGA CCCCAGGGGC
  TGTACCCCTC GGTGGCACCC ACACCCACAG CCTTCTGCCT GCTATTTACC AGCGAGCCAC
  AGAAGCGCGA ATGCAAAACC AGACAGGAAA GGAAGAAGGC GGCGCCCGCC AGGCAGACCC
  AGGCTCTCGC CATCGCGAGG GTCTGGGAGG CGAAAGTCAG CGAGGCCTGA AGCCGGCTCT
  R
  GGGCAGAGGC AGACTAAAGC ACCGGGAAAC TCGACCGGAG AACCGCCGAA GACTAATTCC
  GGGTGTCCTG CTCCTTGCTC CGCCCCGAGT CAGGCGCCCA GCGAGTGACC CTGGTCCCCA
  CGCCGAGGTG CTCCTGGCCA CTAGGATGGC GGCGTCCGCA GATCTTCCTG ACCTACTTAC
  TCTTCGCTCC TTTAAACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357982233	MGP_WTSI_3_53267113	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225153235					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357982233	MGP_WTSI_3_53267113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53370612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	within coordinates
Nhlrc3	NHL repeat containing 3	mRNA-UTR
Proser1	proline and serine rich 1	604 bp upstream
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	382 bp distal
Rr576697	regulatory region 576697	131 bp proximal
Rr576698	regulatory region 576698	400 bp proximal
Rr576699	regulatory region 576699	486 bp proximal
Tssr29113	transcription start site region 29113	383 bp upstream
Tssr29114	transcription start site region 29114	475 bp upstream
Tssr29115	transcription start site region 29115	503 bp upstream
Tssr29116	transcription start site region 29116	588 bp upstream
Tssr29117	transcription start site region 29117	704 bp upstream
Tssr33269	transcription start site region 33269	9 bp downstream
Tssr33270	transcription start site region 33270	43 bp downstream