rs225145515 SNP Detail

Summary

• ID
  rs225145515
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45007566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA ACCCAAATCT CCCTCCTCCC
  C
  TTCCTCTTGC CCTCCTTTCA GCCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320273563	CHEV_2_44973074	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225145515					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45007566 () rs orientation: forward

Symbol	Name	Function Class
Gm28643	predicted gene 28643	651 bp upstream
Rr373117	regulatory region 373117	within coordinates
Rr556444	regulatory region 556444	170 bp distal
Rr556445	regulatory region 556445	within coordinates
Tssr17636	transcription start site region 17636	270 bp downstream
Tssr23988	transcription start site region 23988	556 bp upstream
Tssr23989	transcription start site region 23989	209 bp upstream
Tssr23990	transcription start site region 23990	179 bp upstream
Tssr23991	transcription start site region 23991	143 bp upstream
Tssr23992	transcription start site region 23992	38 bp upstream
Tssr23993	transcription start site region 23993	15 bp upstream
Zeb2	zinc finger E-box binding homeobox 2	159 bp upstream