rs225098603 SNP Detail

Summary

• ID
  rs225098603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:12750988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAATAGG CAGTGATCAA
  AAGATTATAG GTTGATAGGG ATACAAAGGC AGGCTGGTCC TAACTAATGT ATACCCCCCT
  GAAGGAGCAA GTCCTTCAAT ATTCACACTG CCAAAGAAGA AAAAGACCTG CCATTGCCTC
  CTAGGTTCTG TCCTTCAGAA ATGGCTCCTC CATGCAATAC CACTCTGCAT GGAAGCCTCT
  Y
  CCTTTCCCTT CTATTTGTAT TTCTCAGTTG TCGTTAGTGC TCATCCCTGA AGGTCTTCAA
  CCGTGAATGG AATTGTAGAT TCTGCGTTAT TAATGCCCAT TCATAGTGTT CTCCATAAGC
  CCCAAGTCAA TTTACCAGGT GGAGGCTCCG TGTATAACAG AATACGGAGG GTGGAAGAAG
  GTAAATTCGT TAATTTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367413478	MGP_WTSI_6_12700989	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225098603					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367413478	MGP_WTSI_6_12700989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:12750988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17163	CpG island 17163	1438 bp distal
Rr626539	regulatory region 626539	1747 bp distal
Rr626540	regulatory region 626540	1089 bp distal
Rr626541	regulatory region 626541	within coordinates
Rr626542	regulatory region 626542	1490 bp proximal
Thsd7a	thrombospondin, type I, domain containing 7A	1736 bp upstream
Tssr1780	transcription start site region 1780	1799 bp upstream
Tssr59828	transcription start site region 59828	1910 bp upstream
Tssr59829	transcription start site region 59829	1894 bp upstream
Tssr59830	transcription start site region 59830	1822 bp upstream
Tssr59831	transcription start site region 59831	1780 bp upstream
Tssr59832	transcription start site region 59832	1549 bp upstream