rs224890113 SNP Detail

Summary

• ID
  rs224890113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122039340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCGCGC GCTGTTCTCC
  CCCGCGGCGC CGCCCGCTCC CGGCCGCCCG GCGCCACGCC CGCCGCAGGC CGAGGGCCAG
  TCACCCGCGG GCCTGCGCCC CGCCCCTGGC CCGCCGCGGG ACGAGTAACG GTTACGAAGC
  ACTTTCTCGG GTGAGGTTTC TGCTTAGTCA TTGTCTTCCA GGAAACAGCT CCCTCGTTTC
  R
  GCGGCGGCGG CGGTGGCGGC CGCAGAAGCC GCAGCGACCG TCCGCGCCGG CGCCTCCCTC
  CCTTCCTTCC CTCCCTCCGG GACCGCCTCT CCGTCGCCGC CCGGCCTCCT CGGGCCCGAG
  CGCACACCGG GCTGTGGCCG CGCGGAGTCG GCAGCCTCGC GCTCTCCTCT GGGGCCTGGG
  GCACCGCCGC GCCCTGCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359496029	MGP_WTSI_3_121948609	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	G	A	G	A	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224890113					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	G	A	G	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359496029	MGP_WTSI_3_121948609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122039340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit	mRNA-UTR
Gm46822	predicted gene, 46822	185 bp upstream
Gm65290	predicted gene, 65290	1881 bp downstream
Rr375675	regulatory region 375675	1214 bp downstream
Rr397979	regulatory region 397979	191 bp downstream
Rr584262	regulatory region 584262	1839 bp distal
Rr584264	regulatory region 584264	1422 bp distal
Rr584265	regulatory region 584265	352 bp distal
Rr584266	regulatory region 584266	124 bp distal
Rr584267	regulatory region 584267	197 bp distal
Rr584268	regulatory region 584268	531 bp proximal
Tssr1039	transcription start site region 1039	52 bp upstream
Tssr31478	transcription start site region 31478	141 bp downstream
Tssr31479	transcription start site region 31479	113 bp downstream
Tssr31480	transcription start site region 31480	83 bp downstream
Tssr31481	transcription start site region 31481	69 bp downstream
Tssr31482	transcription start site region 31482	within coordinates
Tssr31483	transcription start site region 31483	85 bp upstream
Tssr31484	transcription start site region 31484	219 bp upstream
Tssr35443	transcription start site region 35443	462 bp upstream
Tssr35444	transcription start site region 35444	359 bp upstream