rs224410538 SNP Detail

Summary

• ID
  rs224410538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156813927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCACATTG TGGAGTTCAA AGAAAGGAAG GTGGCTGAGG
  GAGATGAGGT AACTAAGCAG AAAGCCTTCC TTCACCCCAG CGTACAGCCC TGGATAGGCT
  R
  TAAGCACTGG ATACTGCAGC CACATGGTTC TCCCTCTGTG GAGAAAGCAC CACACTTTCT
  TCCTTCTTTC TTGTCCCTGG ACCTATCAGA GCAGGAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320583275	CHEV_2_156797743	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224410538					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156813927 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			1237 bp distal
Rr568396	regulatory region 568396			948 bp proximal
Tssr27078	transcription start site region 27078			1714 bp upstream
Tssr27079	transcription start site region 27079			1589 bp upstream
Tssr27080	transcription start site region 27080			1513 bp upstream
Tssr27081	transcription start site region 27081			1487 bp upstream
Tssr27082	transcription start site region 27082			1434 bp upstream