rs224378116 SNP Detail

Summary

• ID
  rs224378116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101214948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGATTGAA AGCAGAAGTG
  GACCTTAGCG TTGACTAGGG CGCTACCACT TACAGGTGAG AGACACAGGG TAGGTCTAAG
  CTAAATACCG TGTTAGACCC CAGTTTGTTT GGACCGAGAG ACAGCTGAGG GGGTAAAGTA
  GAGCCTAGCA CCGTGCAGCT GTAGTTCCGT TTTGTAACAT TCCTGTGCCT AGAACTTAAA
  R
  ATGGATAACT CAGAACTGCT AACCCCACAG GACTGCTGCG GGGGTTCATG ACCTCTTCCG
  GCACCTTTCT TGAGTGTTGA CTCAAATATG TGTGTGAACA CAGCTTCTTT TCCTCTTCTT
  CTGGGGAGCA TCCTTGTCAT TGAACAAGGC AACATGTGTG CTGTGAAGTG TTTCTGTCCT
  GCTCACAGAG TTGAAAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362612687	MGP_WTSI_4_101030356	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224378116					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362612687	MGP_WTSI_4_101030356	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101214948 () rs orientation: forward

Symbol	Name	Function Class
0610043K17Rik	RIKEN cDNA 0610043K17 gene	within coordinates
Cpgi14499	CpG island 14499	573 bp distal
E130102H24Rik	RIKEN cDNA E130102H24 gene	1503 bp upstream
Rr596126	regulatory region 596126	1637 bp distal
Rr596127	regulatory region 596127	1111 bp distal
Rr596128	regulatory region 596128	1376 bp distal
Rr596129	regulatory region 596129	526 bp distal
Rr596130	regulatory region 596130	45 bp proximal
Rr596131	regulatory region 596131	864 bp proximal
Rr596132	regulatory region 596132	1407 bp proximal
Tssr37988	transcription start site region 37988	1868 bp downstream
Tssr42553	transcription start site region 42553	1822 bp upstream
Tssr42554	transcription start site region 42554	1573 bp upstream
Tssr42555	transcription start site region 42555	1248 bp upstream
Tssr42556	transcription start site region 42556	1233 bp upstream
Tssr42557	transcription start site region 42557	1022 bp upstream
Tssr42558	transcription start site region 42558	1001 bp upstream
Tssr42559	transcription start site region 42559	958 bp upstream