rs224288953 SNP Detail

Summary

• ID
  rs224288953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74530187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGAGAA ACCAAGTGGC
  TTTGGAGTCT TGTCCTGTCC CACTCCCTCC CTTCCCTGCT CCCCTGATTC CTTAGGAAAT
  GCTATATTTT GTGAGTGCAC GCAGGCTTGA TGGAGCCCTA TTCTATGTAA ATGTCCCTCA
  TGTTTCTGAA AAGTGCTGTA GTTTAGTCTC ACCCTATCCA GCCTCCCAAA CAGGGCCAAC
  K
  ATCTAATTCC GAGAATCTGA AGGAAGACAG AGTGTGGACA CCCCCACCCT GCTCTCCCAA
  CTAAAATCCA ACTCAGCTGC TCAAGGCAGG AAAACCCCTT TCCTCGGGGA GCCGGCGGAC
  TGACTTCCAC AGAGGCCTAC CGAGAAACCT TGGGCCCTGG GGCGCGAGAT TGGGGGTGGG
  GTGGGGATAG GCTTAGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484966	MGP_WTSI_2_74537900	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224288953					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484966	MGP_WTSI_2_74537900	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74530187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11799	CpG island 11799	518 bp distal
D2Tfv11	DNA segment, Chr 2, Thomas F. Vogt 11	within coordinates
Gm56188	predicted gene, 56188	1163 bp downstream
Gm75671	predicted gene, 75671	998 bp upstream
Hoxd9	homeobox D9	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559359	regulatory region 559359	508 bp proximal
Rr559360	regulatory region 559360	1009 bp proximal
Tssr18416	transcription start site region 18416	1892 bp downstream
Tssr18417	transcription start site region 18417	1861 bp downstream
Tssr18418	transcription start site region 18418	1835 bp downstream
Tssr18419	transcription start site region 18419	1817 bp downstream