rs224262781 SNP Detail

Summary

• ID
  rs224262781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118931898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGAACA GTGCTCAGCT
  CCTGGCCCAA GCCAGGACAC ACATACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGATGCCATG CTGTGCTTCC
  CGAACAGTGC TCAGCACAGG CCCTACAGGG TTTCCCTAGA CTCAGCCCCC TCCCTCTTTC
  Y
  GACTGCTATG GTGGATGGTG ATTGGAGCCA TAAGACAGAC GTCTGCTTGA AGGCAAGCCT
  GGCCACCTTG GGCGGCATTT CCCTCTCTGG GCTTTAGTTG TGCTGTCTGT AAAGGAGATA
  TGAACACATC TTGGTTGCTT CAGAGGAAGA CTGGGGTCCC GTGCAGCGCT GCCCCTCCCC
  CTCAGCTCCC TCAGCATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321285048	CHEV_4_118747306	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224262781					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118931898 () rs orientation: forward

Symbol	Name	Function Class
Gm35510	predicted gene, 35510	within coordinates
Rr377074	regulatory region 377074	266 bp downstream
Rr598480	regulatory region 598480	1964 bp distal
Rr598481	regulatory region 598481	within coordinates
Rr598482	regulatory region 598482	1774 bp proximal
Tssr43077	transcription start site region 43077	1760 bp upstream
Tssr43078	transcription start site region 43078	1734 bp upstream