rs224195354 SNP Detail

Summary

• ID
  rs224195354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13251564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTCTGT GGTGTTTAGA
  AGGTGCTACC CACCTTCAGC TGACTGTAGT TGGAATGACC CTCAGCTGGA CTTTGGGAAC
  TCACTTGAAC TAGTTAGAAA CTTCAAAGTA CCTAGCAGGA AGCGGCGGGG GTGGGGTGGG
  GGTGGGATTA GAATTTAGCC TGGTCCACTG GGACACTTGG ATACCCCACT GTAAATGATC
  Y
  TGACCTCAGC GCCAAGAATA CAGGCAGCAC CCGGTGGGAC CGGTTCTCTC TCTCTCTCTC
  CCTCTCTCTG TCTCTCTCTC AAGGCTACAT ACGCAGCTCT GCCCTTTACT TCATTTTCTC
  TAGGTTTTGA GACTACTGTA AGACAGATGA GAAAACCTGA GGTTTGTATT GCTTTCCCTC
  CTCCTTGCTT TGACCAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505062	CHEV_8_13201564	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224195354					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13251564 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	within coordinates
Cpgi20110	CpG island 20110	130 bp distal
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	869 bp upstream
Rr659872	regulatory region 659872	1996 bp distal
Rr659873	regulatory region 659873	600 bp distal
Rr659874	regulatory region 659874	81 bp distal
Rr659875	regulatory region 659875	within coordinates
Rr659876	regulatory region 659876	308 bp proximal
Rr659877	regulatory region 659877	659 bp proximal
Tssr76386	transcription start site region 76386	777 bp downstream
Tssr76387	transcription start site region 76387	593 bp downstream
Tssr80428	transcription start site region 80428	928 bp upstream
Tssr80429	transcription start site region 80429	136 bp upstream