rs224066424 SNP Detail

Summary

• ID
  rs224066424
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138122806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGGCGCA ATGGAGCCCG
  GGGTACCGAG GCGGCGGCGC CCCCCGCACG GAGATGCTGC TGGCGCACGT GGCGCGCATC
  GCTCTGGCGC TGCAGCCGCT TGAAGTCGCT GAAGGCCGCC AGCGCAGTCT GGTGGAGCAG
  GCGGGCCAGG GAGCGCGCCT TGTGCGCCCG CGCCAGCAAC ACAGCGTGGC AGCGCAGCAC
  M
  ACGGCCTTGT GGCGTGCCTG GTGGCGGTAG ACCCAGGTGA AGACTCGCGG GTGGCGCCCA
  TCCGCCGCGC AGTAGGTGAT GCGCGGCAGC AGGTAGGCGT GCGCCGGTCT GCGGCCCCCC
  GAAGCCCCGG AGCTGCGTTC GCTCGGCTGC ATGCGGATGC CGTGCGGACC CAGGGTCAGT
  TTCATCTTCG TGCCCCCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363439647	MGP_WTSI_4_137951410	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224066424					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363439647	MGP_WTSI_4_137951410	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138122806 () rs orientation: forward

Symbol	Name	Function Class
AB041806	hypothetical protein, MNCb-2457	within coordinates
Cpgi15151	CpG island 15151	within coordinates
Fam43b	family with sequence similarity 43, member B	Coding-Synonymous
Rr602906	regulatory region 602906	287 bp distal
Rr602907	regulatory region 602907	88 bp distal
Rr602908	regulatory region 602908	61 bp distal
Rr602909	regulatory region 602909	1023 bp proximal
Tssr44164	transcription start site region 44164	892 bp downstream
Tssr44165	transcription start site region 44165	943 bp downstream