rs224031374 SNP Detail

Summary

• ID
  rs224031374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115896367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG GGGGGGGGGG GGGGCTGGGG
  R
  AGGGGAGGCT GGAGCGGAGA GGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss639710496	FVB_NJ_2_115891622	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224031374					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639710496	FVB_NJ_2_115891622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115896367 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	303 bp downstream
Cpgi12067	CpG island 12067	1174 bp distal
Cpgi12068	CpG island 12068	within coordinates
Cpgi12069	CpG island 12069	651 bp proximal
G630016G05Rik	RIKEN cDNA G630016G05 gene	1339 bp upstream
Meis2	Meis homeobox 2	Intron
Rr562985	regulatory region 562985	1258 bp distal
Rr562986	regulatory region 562986	349 bp distal
Rr562987	regulatory region 562987	within coordinates
Rr562988	regulatory region 562988	806 bp proximal
Rr562989	regulatory region 562989	1592 bp proximal
Tssr19467	transcription start site region 19467	1327 bp upstream
Tssr25720	transcription start site region 25720	1986 bp upstream
Tssr25721	transcription start site region 25721	1288 bp upstream
Tssr25722	transcription start site region 25722	1137 bp upstream
Tssr25723	transcription start site region 25723	1115 bp upstream
Tssr25724	transcription start site region 25724	753 bp upstream
Tssr25725	transcription start site region 25725	648 bp upstream
Tssr25726	transcription start site region 25726	230 bp upstream
Tssr25727	transcription start site region 25727	197 bp upstream
Tssr25728	transcription start site region 25728	181 bp upstream
Tssr25729	transcription start site region 25729	151 bp upstream
Tssr25730	transcription start site region 25730	90 bp upstream
Tssr25731	transcription start site region 25731	33 bp upstream
Tssr25732	transcription start site region 25732	58 bp downstream
Tssr25733	transcription start site region 25733	148 bp downstream
Tssr25734	transcription start site region 25734	1239 bp downstream
Tssr25735	transcription start site region 25735	1269 bp downstream
Tssr25736	transcription start site region 25736	1469 bp downstream
Tssr25737	transcription start site region 25737	1505 bp downstream