rs223626473 SNP Detail

Summary

• ID
  rs223626473
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156816188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTATCAG TTTTAAGGGA TAACGGCTGA GCATGTGATC
  CATCACTAAG GATCAGGATC CTCTGAGATG AGAGAGTGAT CACTGACAGC ATTAATAGAG
  M
  TAGAGCTCTA TTAGTTCATC CTGCCATCTC CCCAAAAAGA ATACATCCAG TGTTTTTTAT
  ATAATAAACT ACATGGATCT TAAAAAAGAC TCAACAGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320583289	CHEV_2_156800004	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223626473					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156816188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568396	regulatory region 568396			1036 bp distal
Rr568397	regulatory region 568397			504 bp proximal