rs223481260 SNP Detail

Summary

• ID
  rs223481260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80021281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCGGTGC GCCCGGCAGG
  AGGAGGGGCG CGGGGGACCG CGCGCAGCGT CCCCTAGTGC CGGGTCCCGC CGCTGCCTCG
  CCCCCCGCCG GGTTCCGCAG CGCCCCCTGG CACCCGACTC GGTCGCCTCC CGCTGGGTCG
  GTGCCGGGGT CCGCTATGGC TGCGGGGCGG CTGTGCGCAG CCGTTGACCC GGCAGGGCGG
  R
  AGTGGCGGAA CCCCAGCAAG GTCGCGCCAC TGTTTCTTGT TGTGTTTTTG TTTTTTTTGT
  TTTTGTTTTT GTTTTTTCTC TTGGTCTTCC AAGAGTAAGA TTTAGGCAGG AGCAGAAAGG
  GCAAAACCGT GCGGTGCTTC GTGGCCTCCC TGCCTGGCTC AATAGTGATG TTTCTTAGTC
  AAAGGAATAG TGCCTCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372044204	MGP_WTSI_7_87516419	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223481260					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372044204	MGP_WTSI_7_87516419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80021281 () rs orientation: forward

Symbol	Name	Function Class
Gm71928	predicted gene, 71928	within coordinates
Man2a2	mannosidase 2, alpha 2	158 bp upstream
Rr649878	regulatory region 649878	59 bp distal
Rr649879	regulatory region 649879	136 bp distal
Rr649880	regulatory region 649880	83 bp distal
Rr649881	regulatory region 649881	within coordinates
Tssr67437	transcription start site region 67437	1174 bp downstream
Tssr67438	transcription start site region 67438	918 bp upstream
Tssr73222	transcription start site region 73222	743 bp upstream
Tssr73223	transcription start site region 73223	705 bp upstream
Tssr73224	transcription start site region 73224	664 bp upstream
Tssr73225	transcription start site region 73225	165 bp upstream
Tssr73226	transcription start site region 73226	117 bp upstream
Tssr73227	transcription start site region 73227	39 bp upstream