rs223439373 SNP Detail

Summary

• ID
  rs223439373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180535530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAGAGC TCGGCGGGTT
  GTAGAAAGAG ACTGCTTTTC ATCTCCGAAC ATCGAGGTTC TTTATTTTCA CCGCACTCAC
  GCACTCCTGG TGGGGCCGGG AAGAGGAGCC GGGGAAGGGC AGCTGCGGAG AGGCTTGCGC
  CGCCGGGGTG GAGAGGGCTC TGCACCCGTC AGAAGACTGC AGCAGGCCGG AGCACGCGCG
  Y
  TCACCCCGGC CGGCTCCTGC ATCTCCCTCG CCGCGGCTCC GAGGGGTCCC TACTGCAGGA
  ACGCCCCGAG GGATTTGCCC GGGCCCTTCT CTACCTCGGG GAGGGGAAGG AAAACTGGCT
  CCTCGGAGTT GGGGGCGGAC CAGGGCAGCA CTGCCAGCTT AGCGCGGAGC CCCGCCCCGC
  CCGCCCGCCC CGCGGCGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320632535	CHEV_2_180628442	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223439373					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180535530 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	1930 bp distal
Cpgi12908	CpG island 12908	within coordinates
Gm27032	predicted gene, 27032	mRNA-UTR
Gm57443	predicted gene, 57443	780 bp upstream
Mir124a-3	microRNA 124a-3	303 bp upstream
Rr572876	regulatory region 572876	1907 bp distal
Rr572877	regulatory region 572877	970 bp distal
Rr572878	regulatory region 572878	791 bp distal
Rr572879	regulatory region 572879	650 bp distal
Rr572880	regulatory region 572880	670 bp distal
Rr572881	regulatory region 572881	325 bp distal
Rr572882	regulatory region 572882	within coordinates
Rr572883	regulatory region 572883	1286 bp proximal
Tssr22278	transcription start site region 22278	599 bp downstream
Tssr28138	transcription start site region 28138	798 bp upstream
Tssr28139	transcription start site region 28139	333 bp upstream
Tssr28140	transcription start site region 28140	315 bp upstream