rs223431966 SNP Detail

Summary

• ID
  rs223431966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80019863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGCACAT ATATTTGGGG
  CTGGTCCTGT AGGAGAGGAG TTCTGATTCC CCTCAGCCCA AGCTATAGAA ACCAGGATGT
  GGAGTGTGGG GGTGCAGTAG GTAAAGAGGC ACTTGCAGGC AAGCCTGACA ACCAAAGCGA
  TTCATTTGAT TCATATGGTG GAAGGTGAAA ACCAACTACC ACAAATTGTC CTCTGATTGC
  Y
  GCATGTTTTC TGTGACGTAC ATGCACATAA ATAAATGTAA CACATTACAA ACAAACAAAC
  AGGGATAACA GAGCCCCAAC TCTGACCCAC ACTTCATTAC ACAACCACTG ATTGCAAACA
  GCTTGCTCAG GACTCTGAGA AGGCTCTCCC AAGCCACGTG TTTCCTCCCT TCAGATGTAT
  ACATAAATAC AAGAGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372044187	MGP_WTSI_7_87515001	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223431966					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372044187	MGP_WTSI_7_87515001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80019863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm71928	predicted gene, 71928			1349 bp upstream
Man2a2	mannosidase 2, alpha 2			Intron
				Noncoding-Transcript-Variant
Rr649878	regulatory region 649878			1250 bp proximal
Rr649879	regulatory region 649879			1261 bp proximal
Rr649880	regulatory region 649880			1314 bp proximal
Rr649881	regulatory region 649881			1360 bp proximal
Tssr67437	transcription start site region 67437			204 bp upstream
Tssr73220	transcription start site region 73220			1258 bp upstream
Tssr73221	transcription start site region 73221			1133 bp upstream
Tssr73222	transcription start site region 73222			668 bp downstream
Tssr73223	transcription start site region 73223			700 bp downstream
Tssr73224	transcription start site region 73224			728 bp downstream
Tssr73225	transcription start site region 73225			1082 bp downstream
Tssr73226	transcription start site region 73226			1290 bp downstream
Tssr73227	transcription start site region 73227			1366 bp downstream