rs223236250 SNP Detail

Summary

• ID
  rs223236250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106696729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACGCACG CACCTACTCG
  TCTGTGGCTC AGAGATGAGG GGTGGGGGGA ATTAAAGAGG CTAGGAGGCT TGTTCTACCC
  AAGAACCTGT CAACTGCTTC CCTGTCACCC CTTTATCCTC TGCCACCCCT CCTGGTGTGA
  CTGACAGGCA TCCATCCCGC GAACCTCCTC TCCCAGAACA TCGCCTGAGA GCCCCAAACC
  Y
  CAGCAGGACG TGCCCTGAGG CTGTAGTGTC CGAGGGTCCT GGCCCCCATC GCCGGCCTCG
  CCAGCGCAGC CGCGAGGTCC GGGGTGCGTT TAGGGGATGA TTCCTACTGC AAATGCCCTC
  GTCGCCCGGT TGAGCCGGGA AGTCCGGCTG GAGCGAAGAG CTCTAGGGGG GAAACGGAGG
  GAAAGCCCCA TTCGAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746212	MGP_WTSI_4_106512137	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	T	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	C	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223236250					SNP	C	C	C	C	C	C	T	T	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746212	MGP_WTSI_4_106512137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106696729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14533	CpG island 14533	1280 bp distal
Cpgi14534	CpG island 14534	within coordinates
Gm12746	predicted gene 12746	1478 bp downstream
Gm31125	predicted gene, 31125	within coordinates
Gm57074	predicted gene, 57074	within coordinates
Gm69615	predicted gene, 69615	1311 bp upstream
Rr376971	regulatory region 376971	within coordinates
Rr596835	regulatory region 596835	1958 bp distal
Rr596836	regulatory region 596836	1322 bp distal
Rr596837	regulatory region 596837	1355 bp distal
Rr596838	regulatory region 596838	821 bp distal
Rr596839	regulatory region 596839	464 bp distal
Rr596840	regulatory region 596840	180 bp proximal
Rr596841	regulatory region 596841	564 bp proximal
Rr596842	regulatory region 596842	716 bp proximal
Rr596843	regulatory region 596843	1134 bp proximal
Tssr38191	transcription start site region 38191	675 bp upstream
Tssr42648	transcription start site region 42648	489 bp downstream