rs223082370 SNP Detail

Summary

• ID
  rs223082370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116457199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAACGAG CACAACACAT
  GCTTTCCCCC ATCAAACTGT TCGATAAAGG GGAACTGGAA ACAAACCAAA CTGTGGCAAC
  AGCGATCCTG GATGTGGTGG CTCTAAGTAA GATAAATGTT CCCAAACTCA GTGATATTCC
  TCCCTGGGAG AAGTGGAAGG GGCTCCCTCC CTCTCCTGGC TTGTGGCCTG GTTAGTGATG
  R
  ATGACCTTGT TTTAACAGGG CAAAGCAGAA ATGACAGCAC TGACTTTAGA GGAGAGGTCA
  TAAAAGGTAC TGTATGTTTT TGCTAGGCTC TTCATTTACT CCAGTCAGGG GTTGCCGATT
  GTTATGCCAT AATACCAGAG GAACTATGGA GAGGTGCTGC CGTTGAGCTG AAATCTCCTT
  CAAAGCTTTG TGGATTATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359358743	MGP_WTSI_3_116366468	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223082370					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359358743	MGP_WTSI_3_116366468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116457199 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	182 bp upstream
Cpgi13738	CpG island 13738	522 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	935 bp upstream
Rr375625	regulatory region 375625	480 bp upstream
Rr397966	regulatory region 397966	749 bp downstream
Rr583758	regulatory region 583758	884 bp distal
Rr583759	regulatory region 583759	383 bp distal
Tssr31364	transcription start site region 31364	1775 bp downstream
Tssr35324	transcription start site region 35324	1446 bp upstream
Tssr35325	transcription start site region 35325	1211 bp upstream
Tssr35326	transcription start site region 35326	1002 bp upstream
Tssr35327	transcription start site region 35327	980 bp upstream
Tssr35328	transcription start site region 35328	966 bp upstream
Tssr35329	transcription start site region 35329	909 bp upstream
Tssr35330	transcription start site region 35330	896 bp upstream