rs222826410 SNP Detail

Summary

• ID
  rs222826410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCTCCAG TGGTCCAGTC
  TAGGTCCCCT TCCCCCAAAC TCTTCTCCTC TCCATGGCCC CAGTCTGCAC CCCGATAAGC
  CCTTTCCAGT GAACTCTGCC TAGGTTTGTT TCCTTCACCG TCATGGAATC TTCTCTCTGC
  GGTCGGTCCT CAAGTGTGGC CTCTCTACTC CAGCTGTGTT CCCCCCCTCC CTGCACCTCC
  Y
  TGTCCCCGGC CCTAGCCGTC CCCTTCCCCC GACTTCTCAC GACTTAGCCT AGCCTGCGTC
  AGCCCTTCGC TGCTCTCACC CTCCCATCTA GACCCTGCTT GTTCCGTGTC CTGCTCCTGA
  CCCAGGTGTC CCCTCTCCTG TTCCTAGGAG GCTCTTTCTG GGCAGCCTCT GGCGAGCGGG
  GGAGAGCCCC AGCCAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363460531	MGP_WTSI_4_138749520	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222826410					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363460531	MGP_WTSI_4_138749520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			within coordinates
Rr377279	regulatory region 377279			within coordinates
Rr603133	regulatory region 603133			899 bp distal
Rr603134	regulatory region 603134			671 bp distal
Rr603135	regulatory region 603135			509 bp distal
Rr603136	regulatory region 603136			within coordinates
Tssr39900	transcription start site region 39900			664 bp downstream
Tssr39901	transcription start site region 39901			645 bp downstream
Tssr39902	transcription start site region 39902			611 bp downstream
Tssr39903	transcription start site region 39903			353 bp downstream
Tssr39904	transcription start site region 39904			319 bp downstream
Tssr39905	transcription start site region 39905			275 bp downstream
Tssr39906	transcription start site region 39906			481 bp upstream
Tssr44214	transcription start site region 44214			1137 bp upstream
Tssr44215	transcription start site region 44215			968 bp upstream
Tssr44216	transcription start site region 44216			947 bp upstream
Tssr44217	transcription start site region 44217			887 bp upstream
Tssr44218	transcription start site region 44218			391 bp downstream