rs222653602 SNP Detail

Summary

• ID
  rs222653602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74515479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAATG AGATTGAAGC
  AGTAGGAGTC TAAGAGCAAA TTCTCACCCC ACCCCCACCT CTAGTCTAAT GAACTTGGAA
  TTTTTGGAAG GAAAAAACAA ATTTTAAACT TAATTAGAGG ATCCAAATGA TCTCTTAACA
  TGGTGACAAG GAGCTAGAGT TTCTTAAGAA GAAGAAGGGG GTAAAATCCT CCTTGTGAGG
  Y
  GGGGGAAGTT TGTTAAGAGG AAGTTAATAG GTGCAGGGAC TTGGGGTCTT TCTGATGTCA
  TGAAGCAGGG ACTGTGAACC CCCCTCACTG GACTAAGGCT GCAAAACTGC TTCTCACCAC
  ATTTATCGCT TTAAGTTAAA GAATGTGGTG AGGGCTGCAG TGCCCTTTAT GTCACAGGAC
  CAAGCCAGGC TGTTTACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484837	MGP_WTSI_2_74523192	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222653602					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484837	MGP_WTSI_2_74523192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74515479 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11794	CpG island 11794			1174 bp distal
D2Mit271	DNA segment, Chr 2, Massachusetts Institute of Technology 271			180 bp distal
D2Tfv9	DNA segment, Chr 2, Thomas F. Vogt 9			163 bp distal
Gm28309	predicted gene 28309			within coordinates
Gm74919	predicted gene, 74919			within coordinates
Hoxd11	homeobox D11			mRNA-UTR
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr44604	regulatory region 44604			1122 bp proximal
Rr559345	regulatory region 559345			1679 bp distal
Rr559346	regulatory region 559346			1 bp proximal
Rr559347	regulatory region 559347			1109 bp proximal
Rr559348	regulatory region 559348			1341 bp proximal
Tssr18402	transcription start site region 18402			1667 bp downstream
Tssr18403	transcription start site region 18403			1291 bp downstream
Tssr18404	transcription start site region 18404			1234 bp downstream
Tssr18405	transcription start site region 18405			1418 bp upstream