rs222646463 SNP Detail

Summary

• ID
  rs222646463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagaagcaa ctcagtaagc cgtgttcctc
  caaggtctct tcttcagttg cctgcaggtt cctgacctga ctttcctcaa tgatgaagtg
  tcgcctgagt attacaagct gaaataagtc ctttcctccc caagttgctc ttagtcatgg
  Y
  atttactata acaatagaaa cTAAGACAGT GGCCTTCAAA ACCCAAACTC TGATCTTAAA
  AAAAAATAAT AATCAGTAAA GCTCAATCAT AGTTTTTCAG TGTTAGCTCA GAAAGGTCTG
  AGCTCCCCTT TCACCCGAGT GTAATTCAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320065952	CHEV_1_154307794	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222646463					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1336 bp distal
Rr420465	regulatory region 420465			1115 bp proximal
Rr420466	regulatory region 420466			1763 bp proximal