rs222431793 SNP Detail

Summary

• ID
  rs222431793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154110906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAGAT GGCCCCTTTG
  AACTGGTGGC ACCCAGTGCA GGGGAGCTGC AGTAGCAGAA GAGCGGGTGC GCAAGATGTG
  GATGAAGAGC CAGCAGGTGA GTGAGCGCTC TACTGAGCAG AACACGTGGT ACAGACTTCA
  TGACCCACAG ACCGCAGGAG CCCAAGGATT GGGAAGATGT CCTCTGTAGC TCTACTGCCT
  Y
  CTGCCTCCCA CCCTTTCTCC ATCTTCCAAA GGGGCCCCGG TAGCAAGAGC ATGCCCCAGC
  AGAAGTTTGG ATCAGAAGGA GCATGGGGGC ACCCAGCCTC TGACCCAGAG GAGGGTGCAG
  TGGGAGGGGA CATGACCTGG GTGGTTCAGG TGCAGAGAAT GAGGTCCTGT AGGTACCAGA
  GAGATGAGAC GGTGGCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363758504	MGP_WTSI_4_153400558	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222431793					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363758504	MGP_WTSI_4_153400558	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154110906 () rs orientation: forward

Symbol	Name	Function Class
Ccdc27	coiled-coil domain containing 27	190 bp downstream
Cpgi15428	CpG island 15428	327 bp distal
Gm57064	predicted gene, 57064	within coordinates
Rr606055	regulatory region 606055	1604 bp distal
Rr606056	regulatory region 606056	239 bp distal
Rr606057	regulatory region 606057	284 bp distal
Rr606058	regulatory region 606058	within coordinates
Smim1	small integral membrane protein 1	356 bp upstream
Tssr40573	transcription start site region 40573	390 bp downstream
Tssr40574	transcription start site region 40574	237 bp downstream
Tssr44854	transcription start site region 44854	815 bp upstream
Tssr44855	transcription start site region 44855	763 bp upstream
Tssr44856	transcription start site region 44856	530 bp upstream
Tssr44857	transcription start site region 44857	457 bp upstream
Tssr44858	transcription start site region 44858	357 bp upstream