rs222178883 SNP Detail

Summary

• ID
  rs222178883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGTGAA GAGACCGACT
  GTCGGTTCGC AGAAGTCAGG CTGTGGCCCG CAGCAGGAGC TTTCTCCTTT TATGGGGCGG
  CCTGGGGGCG TGGCCACTAG AGCTTCCGGG ACGCGCCCCC GCGGCGTAGC TCGGCCGGCC
  TGGTACTAGG CCCCTTCCGC CTATCTGCTG GTTAGCATGC AAAATGTGCC TGAACTTGGC
  Y
  CTCCCGCAGC TCCGGCCCCT CTCGGGGGGT AGTAGGGAGG GTTGTGTACG ACCAACTGGA
  GGTGATGGTA GCGGGGCGTC CTAGTGTTTT TCAGAGGTGG AAGGCAGTCG GGAAGAGAAC
  TGGGGCAGAA GTGGGGGCAG GGCTCTAGGG ACAATTGACA AGGGCAGAGA CTGAGGGCGT
  GTGCGTGTGA GACAGACGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858542	MGP_WTSI_7_29164431	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222178883					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858542	MGP_WTSI_7_29164431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078837 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	1000 bp downstream
Gm73795	predicted gene, 73795	1837 bp upstream
Rr368284	regulatory region 368284	1122 bp upstream
Rr400210	regulatory region 400210	within coordinates
Rr644240	regulatory region 644240	1458 bp distal
Rr644241	regulatory region 644241	422 bp distal
Rr644242	regulatory region 644242	168 bp distal
Rr644243	regulatory region 644243	within coordinates
Rr644244	regulatory region 644244	718 bp proximal
Rr644245	regulatory region 644245	831 bp proximal
Rr644246	regulatory region 644246	1347 bp proximal
Rr644247	regulatory region 644247	1848 bp proximal
Tssr2163	transcription start site region 2163	12 bp upstream
Tssr2164	transcription start site region 2164	77 bp downstream
Tssr2165	transcription start site region 2165	120 bp downstream
Tssr65463	transcription start site region 65463	1917 bp downstream
Tssr65464	transcription start site region 65464	1359 bp downstream
Tssr65465	transcription start site region 65465	22 bp downstream
Tssr65466	transcription start site region 65466	1847 bp upstream
Tssr65467	transcription start site region 65467	1871 bp upstream
Tssr65468	transcription start site region 65468	1980 bp upstream
Tssr71496	transcription start site region 71496	1781 bp upstream
Tssr71497	transcription start site region 71497	1533 bp upstream
Tssr71498	transcription start site region 71498	1472 bp upstream
Tssr71499	transcription start site region 71499	1378 bp upstream
Tssr71500	transcription start site region 71500	1354 bp upstream
Tssr71501	transcription start site region 71501	1327 bp upstream
Tssr71502	transcription start site region 71502	1302 bp upstream
Tssr71503	transcription start site region 71503	1261 bp upstream
Tssr71504	transcription start site region 71504	1230 bp upstream
Tssr71505	transcription start site region 71505	1213 bp upstream
Tssr71506	transcription start site region 71506	1199 bp upstream
Tssr71507	transcription start site region 71507	1152 bp upstream
Tssr71508	transcription start site region 71508	1118 bp upstream
Tssr71509	transcription start site region 71509	1058 bp upstream
Tssr71510	transcription start site region 71510	1014 bp upstream
Tssr71511	transcription start site region 71511	978 bp upstream
Tssr71512	transcription start site region 71512	898 bp upstream
Tssr71513	transcription start site region 71513	311 bp upstream
Tssr71514	transcription start site region 71514	177 bp upstream
Tssr71515	transcription start site region 71515	149 bp upstream
Tssr71516	transcription start site region 71516	869 bp downstream
Tssr71517	transcription start site region 71517	1515 bp downstream
Tssr71518	transcription start site region 71518	1537 bp downstream
Tssr71519	transcription start site region 71519	1558 bp downstream
Tssr71520	transcription start site region 71520	1602 bp downstream
Tssr71521	transcription start site region 71521	1614 bp downstream
Tssr71522	transcription start site region 71522	1656 bp downstream
Tssr71523	transcription start site region 71523	1880 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR