rs222095985 SNP Detail

Summary

• ID
  rs222095985
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69717940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTTTTT CTTGTACCAA
  ATGTCTTGCT AATATTAGTT GGTGATGTGT TATCTGTTGG TAAGAAAGGA TGGATGGATG
  AAACTAGTTA GGTCCCTCTC CTCTTTCCCT CTCCCTCTCC CTCTCCCTCT CCCTCTCCCT
  CCCCCTCTCC CTCTCTGCCC CCTCTCTCTG CCCCCTCTCT CTCCCCCCTC TCTCCCCCCT
  G
  TCTCCCCCTC TCCCCAAAAA ACAAAAACAA AAAAGAATTT TATGTGTATA GGTGTTTAGC
  CTGTGTTATG TCTCTGTACC ATTTGCATGC CTGGTGCCTG CAAAGTTCAG AAGAATGCAT
  TAGGTTCCCT GGAACAGGAG TTGTAAGCTA CCACGTGGAT ACTGAGAATT GAACCTGGGT
  CCTTTTGAAG ATCAGCCAGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss354380406	MGP_WTSI_2_69725653	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs222095985					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354380406	MGP_WTSI_2_69725653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69717940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11720	CpG island 11720			1607 bp distal
Mettl5	methyltransferase 5, N6-adenosine			mRNA-UTR
				Noncoding-Transcript-Variant
Mettl5os	methyltransferase 5, opposite strand			within coordinates
Rr558488	regulatory region 558488			1904 bp distal
Rr558489	regulatory region 558489			1950 bp distal
Rr558490	regulatory region 558490			1393 bp distal
Tssr24451	transcription start site region 24451			1966 bp upstream