CTAAAAGTGC TAGGGATACT GGGAGGGCAC CACTAAGACA AATTCCCTCC CCTGGCTCAC ACCACAGCCA CCAAAAGGCC ATATCTAGCT CCTCAACTGC CTGCTATAGA TAAAGTTCTG GCTTCTGATA CTGAACCCTG TACAGTTGCC TTCCGTATCC TGCAAGTAAG TCCCTGCTTT GTGTTCTGAC GACAGAATGG R GATCCCCATG TATCCTGGGT ACCCTGGCAC TCAGATATGA AGACAGGAGA GAGTCTGTCA CTATGGTAAA ACCCAGGAGC TCCGAGCAAT ATCAATACTG GAACAAGCCC TCTGTGGGGC CACTGAGAGC CTAAAAGGCT GGTGGTGTGG TCAGGGTGGT GCAGAGGCAG CAGCCACAGG AGCTAGTCCA GCAGCACCCG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss354829708 | MGP_WTSI_2_92230646 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs221949267 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss354829708 | MGP_WTSI_2_92230646 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr2:92220834 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11929 | CpG island 11929 | 880 bp distal | ||||||
Cpgi11930 | CpG island 11930 | 1615 bp proximal | ||||||
Gm74778 | predicted gene, 74778 | within coordinates | ||||||
Mapk8ip1 | mitogen-activated protein kinase 8 interacting protein 1 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr560906 | regulatory region 560906 | 868 bp distal | ||||||
Rr560907 | regulatory region 560907 | 277 bp distal | ||||||
Rr560908 | regulatory region 560908 | 155 bp proximal | ||||||
Rr560909 | regulatory region 560909 | 1143 bp proximal | ||||||
Tssr25252 | transcription start site region 25252 | 1470 bp upstream | ||||||
Tssr25253 | transcription start site region 25253 | 1154 bp upstream | ||||||
Tssr25254 | transcription start site region 25254 | 1846 bp downstream | ||||||
Tssr25255 | transcription start site region 25255 | 1952 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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