rs221398305 SNP Detail

Summary

• ID
  rs221398305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155871438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT CCTAACTGCT GAGCCATTTC
  W
  CTAGGCTCTG ACATTTATTT TTGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442849	CHEV_4_155161090	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221398305					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155871438 () rs orientation: forward

Symbol	Name	Function Class
Rr606571	regulatory region 606571	803 bp distal
Rr606572	regulatory region 606572	1440 bp proximal
Rr606573	regulatory region 606573	1933 bp proximal
Tmem278	transmembrane protein 278	1107 bp upstream
Tssr44974	transcription start site region 44974	1963 bp upstream
Tssr44975	transcription start site region 44975	1942 bp upstream
Tssr44976	transcription start site region 44976	1929 bp upstream
Tssr44977	transcription start site region 44977	1907 bp upstream
Tssr44978	transcription start site region 44978	1101 bp upstream
Tssr44979	transcription start site region 44979	1061 bp upstream